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Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 12:58 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about SLC39A8-CDG
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 8 | Brain shrinkage (cerebral atrophy), Inability to walk, Seizure |
Muscles | 4 | Brain shrinkage (cerebral atrophy), Shrinkage of the cerebellum (cerebellar atrophy), Low muscle tone (hypotonia) |
Eyes | 2 | Strabismus, Nystagmus |
Bones and joints | 2 | Joint hypermobility, Mild bone density loss (osteopenia) |
Head and neck | 1 | Craniosynostosis |
Ears | 1 | Hearing loss (hearing impairment) |
Growth and development | 1 | Short stature |
Blood and immune system | 1 | Recurrent infections |
SLC39A8-CDG is characterized by a severe, primarily neurologic phenotype with developmental delay, intellectual disability, muscular hypotonia, and variable additional neurologic symptoms including dyskinetic movements and spasticity. To date, 15 individuals have been identified with pathogenic variants in SLC39A8 [, , , , ]. The following description of the phenotypic features associated with this condition is based on these reports. Table 2. SLC39A8-CDG: Frequency of Select Features
Feature | Proportion of Persons w/Feature | Comment |
|---|---|---|
Developmental delay/intellectual disability | 15/15 | — |
Hypotonia | 15/15 | Truncal postural hypotonia |
Feeding difficulties | 14/15 | — |
Movement disorder | 15/15 | Dyskinetic movements |
Spasticity | 9/15 | Variable (mild to severe) |
Epilepsy | 9/15 | — |
Growth deficiency | 3/15 | — |
Ophthalmologic manifestations | 14/15 | Strabismus, cortical blindness |
Hearing impairment | 3/15 | Developmental delay (DD) and intellectual disability (ID). All known individuals exhibit varying degrees of DD and subsequent ID. Milestones of motor development are typically reached with major delays, although some are never reached. |
Source: GeneReviews — "SLC39A8-CDG"
SLC39A8 function has not been fully characterized.
SLC39A8-CDG is associated with mutations in the SLC39A8 gene on chromosome 4.
SLC39A8-CDG should be suspected in probands with the following clinical, laboratory, imaging, and family history findings.
Clinical findings
Mild-to-profound developmental delay and/or intellectual disability
Generalized hypotonia of infancy
Feeding difficulties with poor weight gain and growth deficiency
Movement disorder with marked dystonia
Spasticity
Epilepsy, especially severe infantile epileptic spasms not responding to conventional treatment
Ophthalmologic manifestations including cortical blindness and strabismus
Sensorineural hearing impairment
Laboratory findings
Source: GeneReviews — "SLC39A8-CDG"
Early infantile presentation (in those infants who have not yet had an MRI). Many metabolic and genetic disorders that present in infancy share at least some of the clinical features of SLC39A8-CDG. Metabolic disorders in the differential diagnosis of hypotonia, developmental delay, and growth deficiency are summarized in . Table 3a. Metabolic Disorders to Consider in the Differential Diagnosis of SLC39A8-CDG in Infants Who Have Not Yet Had an MRI
Genes | Disorder | Clinical Characteristics | Comment |
|---|---|---|---|
169 genes1 | Other CDG CDDG (See CDG-N-Linked Multiple Pathway Overview, PMM2-CDG, NGLY1-CDDG.) | DD; Seizures; Liver disease | CDG CDDG can be clinically indistinguishable. However, the combination of mitochondrial dysfunction dysglycosylation w/ manganese levels is exclusive to SLC39A8-CDG. 300 genes |
Genetic testing for SLC39A8 is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for SLC39A8-CDG. The disease remains an area of unmet medical need.
No clinical practice guidelines for SLC39A8-CDG have been published. Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with SLC39A8-CDG, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 4. Recommended Evaluations Following Initial Diagnosis in Individuals with SLC39A8-CDG
System/Concern | Evaluation | Comment |
|---|---|---|
Development | Developmental assessment | To incl motor, adaptive, cognitive, speech-language eval; Eval for early intervention/ special education |
Neurologic | Neurologic eval | To incl brain MRI; Consider EEG if seizures are a concern. Feeding/Nutrition |
Eyes | Ophthalmologic eval | To assess for reduced vision, abnormal ocular movement, best corrected visual acuity, refractive errors, strabismus |
Hearing | Audiologic eval | Assess for hearing loss. |
Musculoskeletal | Orthopedics/ physical medicine rehab/ PT OT eval | To incl assessment of:; Gross motor fine motor skills; Contractures, clubfoot, kyphoscoliosis; Mobility, ADL, need for adaptive devices; Need for PT (to improve gross motor skills) /or OT (to improve fine motor skills) |
Source: GeneReviews — "SLC39A8-CDG"
Fever. It is well established that increases in body temperature are associated with further impairment of the residual glycosylation in congenital disorders of glycosylation. Therefore, antipyretic treatment to reduce and/or prevent fever is recommended. Hepatotoxic drugs. In those with evidence of liver dysfunction, hepatotoxic agents should be avoided or used with extreme caution. Drugs contraindicated in mitochondriopathies. Due to secondary impairment of mitochondrial function, agents contraindicated in mitochondriopathies (e.g., valproate) should be avoided in individuals with SLC39A8-CDG.
Source: GeneReviews — "SLC39A8-CDG"
View trials for SLC39A8-CDG
To monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations, the evaluations summarized in are recommended. Table 6. Recommended Surveillance for Individuals with SLC39A8-CDG
System/Concern | Evaluation | Frequency |
|---|---|---|
Development | Monitor developmental progress educational needs. | At each visit Neurologic |
Liver | AST, ALT, albumin | Annually in those w/evidence of liver disease; further follow up as needed Musculoskeletal |
Family/Community | Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources), care coordination, or follow-up genetic counseling if new questions arise (e.g., family planning). | At each visit ALT = alanine transaminase; AST = aspartate transaminase; DXA = dual-energy x-ray absorptiometry; OT = occupational therapy; PT = physical therapy |
Source: GeneReviews — "SLC39A8-CDG"
Phenotype severity distribution: 6 always present features, 1 very common feature, 6 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for SLC39A8-CDG.
6 publications have been identified in PubMed for SLC39A8-CDG. Research spans Basic Science / Preclinical (50%), Review / Meta-Analysis (33%), and Case Report / Case Series (17%).
Varbanova V (2026). [PMID: 41669571](https://pubmed.ncbi.nlm.nih.gov/41669571/). *Cureus*. [Case Report / Case Series]
Prajapati M (2026). [PMID: 41979805](https://pubmed.ncbi.nlm.nih.gov/41979805/). *Biometals*. [Review / Meta-Analysis]
Quelhas D (2026). [PMID: 41554664](https://pubmed.ncbi.nlm.nih.gov/41554664/). *J Inherit Metab Dis*. [Review / Meta-Analysis]
Wang WA (2025). [PMID: 39884836](https://pubmed.ncbi.nlm.nih.gov/39884836/). *Life Sci Alliance*. [Basic Science / Preclinical]
Cai Z (2025). [PMID: 40956895](https://pubmed.ncbi.nlm.nih.gov/40956895/). *Proc Natl Acad Sci U S A*. [Basic Science / Preclinical]
Choi EK (2024). [PMID: 39435657](https://pubmed.ncbi.nlm.nih.gov/39435657/). *JCI Insight*. [Basic Science / Preclinical]
20 genes | Peroxisomal biogenesis defects (See Zellweger Spectrum Disorder.) | Multisystem involvement; DD/ID; Neurologic dysfunction; Liver disease | — |
Unlike persons w/peroxisomal biogenesis defects, persons w/SLC39A8-CDG do not have abnormal VLCFAs. 20 genes | Urea cycle disorders/ organic acidemias (See Propionic Acidemia, Glutaric Acidemia Type 1, Isolated Methylmalonic Acidemia, Disorders of Intracellular Cobalamin Metabolism.) | Hypotonia; Growth deficiency; Feeding intolerance; DD/ID | Unlike persons w/urea cycle disorders/ organic acidemias, persons w/SLC39A8-CDG do not typically have episodes of metabolic decompensation or hyperammonemia.; The disorders are further distinguished by the presence of abnormal transferrin glycoform analysis levels of manganese in SLC39A8-CDG. |
Source: GeneReviews — "SLC39A8-CDG"
Genetic counseling | By genetics professionals1 | To obtain a pedigree inform affected persons their families re nature, MOI, implications of SLC39A8-CDG to facilitate medical personal decision making Family support resources |