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Features include always present findings: Decreased body weight, Large hands, Short foot, and Hyperactivity and others; and very common findings: Intellectual disability, Patchy alopecia, Hypoplasia of the maxilla, and Severe intellectual disability and others. 66 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 13 | Seizure, Aggressive behavior, Intellectual disability |
Arms and legs | 8 | Large hands, Short foot, Lower limb hyperreflexia |
Head and neck | 7 | Facial hypotonia, Microcephaly, Hypoplasia of the maxilla |
Growth and development | 2 | Short stature, Failure to thrive |
Muscles | 2 | Flexion contracture, Facial hypotonia |
Lungs and breathing | 2 | Recurrent upper respiratory tract infections, Recurrent respiratory infections |
Blood and immune system | 2 | Recurrent upper respiratory tract infections, Recurrent respiratory infections |
Eyes | 1 | Strabismus |
Skin | 1 | Patchy alopecia |
Digestive system | 1 | Cholelithiasis |
KDM5C encodes lysine demethylase 5C (1,560 aa). Histone demethylase that specifically demethylates 'Lys-4' of histone H3, thereby playing a central role in histone code. Highest expression in Ovary (77.2 TPM) and Uterus (76.8 TPM).
Syndromic X-linked intellectual disability Claes-Jensen type is associated with mutations in the KDM5C gene on chromosome X.
The KDM5C protein participates in NFE2L2-dependent IDH1 gene expression pathway.
KDM5C is classified as a druggable target (Clinically Actionable, Druggable Genome, and Enzyme categories) with score 2.9.
Genetic testing for KDM5C is available. Testing is considered confirmatory for diagnosis.
Phenotype severity distribution: 13 always present features, 6 very common features, 6 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for syndromic X-linked intellectual disability Claes-Jensen type.
2 publications have been identified in PubMed for syndromic X-linked intellectual disability Claes-Jensen type. Research spans Review / Meta-Analysis (50%) and Basic Science / Preclinical (50%).
Ghasemi MR (2025). [PMID: 39835750](https://pubmed.ncbi.nlm.nih.gov/39835750/). *Mol Genet Genomic Med*. [Review / Meta-Analysis]
Meng Y (2025). [PMID: 39948613](https://pubmed.ncbi.nlm.nih.gov/39948613/). *Ital J Pediatr*. [Basic Science / Preclinical]
Data assembled from 6 of 12 sources · Last updated Sep 18, 2026, 6:49 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center