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A form of L1 syndrome caused by changes in the L1CAM gene characterized by severe hydrocephalus mostly with prenatal onset, signs of intracranial hypertension, adducted thumbs, spasticity, and severe intellectual deficit. HSAS represents the severe end of the spectrum and is associated with poor prognosis.
Features include always present findings: Hydrocephalus, Thumb contracture, and Intellectual disability; and common findings: Aqueductal stenosis, Spastic paraplegia, and Spasticity. 11 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 4 | Hydrocephalus, Spastic paraplegia, Spasticity |
Muscles | 1 | Thumb contracture |
Head and neck | 1 | Macrocephaly |
Age of onset: at birth.
L1 syndrome is seen almost exclusively in males. Affected Males L1 syndrome comprises three clinical phenotypes ranging from severe to mild; its major features are hydrocephalus, intellectual disability, spasticity of the legs, and adducted thumbs. To date, more than 280 individuals have been identified with a pathogenic variant in L1CAM . compares the features among the various phenotypes associated with L1 syndrome. It is important to note that all phenotypes can be observed within the same family. Table 2. L1 Syndrome: Comparison of Phenotypes in Male Probands by Select Features Feature | L1 Phenotype
HSAS | MASA syndrome,incl SPG1 | X-linked complicatedCC agenesis |
|---|---|---|
of aqueduct of Sylvius | 100% | Variable dilation ofthe 3rd ventricle |
CC agenesis/hypogenesis | +(accompanieshydrocephalus) | + in some |
Intellectual disability | Severe | Mild to moderate |
Delayed speech | + | + |
Spasticity of legs | + | + |
Adducted thumbs |
Source: GeneReviews — "L1 Syndrome"
L1CAM encodes L1 cell adhesion molecule (1,257 aa). Neural cell adhesion molecule involved in the dynamics of cell adhesion and in the generation of transmembrane signals at tyrosine kinase receptors. Highest expression in Brain Cerebellum (258.9 TPM) and Brain Cerebellar Hemisphere (236.4 TPM).
X-linked hydrocephalus with stenosis of the aqueduct of Sylvius is associated with mutations in the L1CAM gene on chromosome X.
The L1CAM protein participates in L1CAM interactions, Other semaphorin interactions, and pL1 (Y1229):L1CAM pathways.
L1CAM is classified as a druggable target (Cell Surface, Druggable Genome, and Kinase categories) with score 0.0.
In their review, noted that pathogenic missense variants in extracellular domains or pathogenic variants in cytoplasmic regions cause milder phenotypes than those resulting from truncation in extracellular domains or from nondetectable L1 protein. Pathogenic missense variants that affect "key amino acid residues" are most likely to result in a severe phenotype. Key amino acid residues are those crucial for the structure of the immunoglobulin or fibronectin type III-like domains of the L1 protein . A statistical analysis was performed on 33 individuals with L1 syndrome in whom a pathogenic variant was identified to detect any possible genotype-phenotype correlation.
Source: GeneReviews — "L1 Syndrome"
L1 syndrome involves a phenotypic spectrum ranging from severe to mild. L1 syndrome should be suspected in individuals with any of the following clinical phenotypes or neuroimaging findings and supportive family history.
X-linked hydrocephalus with stenosis of aqueduct of Sylvius (HSAS). Signs present in affected males:
Source: GeneReviews — "L1 Syndrome"
The differential diagnosis of males with developmental delay or intellectual disability and early hypotonia evolving into spastic paraplegia during childhood, with or without adducted thumbs, includes many conditions. See OMIM Autosomal Dominant, Autosomal Recessive, and Nonsyndromic X-Linked Intellectual Developmental Disorder Phenotypic Series. Nonsyndromic congenital hydrocephalus. Individuals with L1 syndrome and hydrocephalus do not have major additional physical anomalies. Other single-gene causes of nonsyndromic congenital hydrocephalus include biallelic pathogenic variants in CCDC88C, MPDZ, and WDR8 (see OMIM PS236600). Nonsyndromic congenital hydrocephalus may also occur as part of (or secondary to) the following:
Source: GeneReviews — "L1 Syndrome"
Genetic testing for L1CAM is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for X-linked hydrocephalus with stenosis of the aqueduct of Sylvius. The disease remains an area of unmet medical need.
Evaluations Following Initial Diagnosis To establish the extent of disease and needs in an individual diagnosed with L1 syndrome, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended. Table 3. Recommended Evaluations Following Initial Diagnosis in Individuals with L1 Syndrome
System/Concern | Evaluation | Comment |
|---|---|---|
Brain malformation | Brain imaging study | MRI is preferred. |
Intellectual disability | Developmental eval | — |
Spasticity | Complete neurologic eval | — |
Adducted thumbs | Clinical observation | Hirschsprung disease |
association | Eval for Hirschsprung disease if there is history of constipation | — |
Genetic counseling | By genetics professionals1 |
Source: GeneReviews — "L1 Syndrome"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "L1 Syndrome"
1 trial found
Table 5.
Recommended Surveillance for Individuals with L1 Syndrome
System/Concern | Evaluation | Frequency
| Neurologic eval | At regular intervals per individual patient
DD/ID
Spastic paraplegia
DD = developmental delay; ID = intellectual disability
Source: GeneReviews — "L1 Syndrome"
Phenotype severity distribution: 3 always present features, 3 common features.
Estimated prevalence: 1-9 in 100,000 (Uncommon).
1 clinical trial registered, 1 recruiting. Interventions under study include biologic therapy. Research is primarily sponsored by academic and government institutions.
2 publications have been identified in PubMed for X-linked hydrocephalus with stenosis of the aqueduct of Sylvius. Research spans Case Report / Case Series (50%) and Basic Science / Preclinical (50%).
Wang Z (2025). [PMID: 41423712](https://pubmed.ncbi.nlm.nih.gov/41423712/). *Mol Genet Genomic Med*. [Case Report / Case Series]
Hastar N (2025). [PMID: 40892511](https://pubmed.ncbi.nlm.nih.gov/40892511/). *J Clin Invest*. [Basic Science / Preclinical]
Data assembled from 8 of 12 sources · Last updated Sep 21, 2026, 5:32 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about X-linked hydrocephalus with stenosis of the aqueduct of Sylvius
50% |
Treatment of Manifestations in Individuals with L1 Syndrome Manifestation/Concern | Treatment | Considerations/Other |
Hydrocephalus | Surgical treatment as needed | Shunting of CSF is indicated to intracranial pressure.; Prenatal shunting offers no advantage . |
DD/ID | See . | Developmental outcome is variable individualized educational program is important. Spastic |
paraplegia | Standard treatment guidelines for spasticity should be followed. | Neurologic features should be monitored. Adducted |
thumbs | A splint may help degree of adduction. | Surgical intervention is not generally indicated.; In some milder cases, tendon transfer may improve thumb function. |