Kisho is an information platform, not a medical provider. Nothing on this site constitutes medical advice, diagnosis, or treatment recommendations. All content is aggregated from publicly available sources (including ClinicalTrials.gov, PubMed, FDA.gov, and Orphanet) and is provided for informational purposes only. Clinical trial eligibility, treatment decisions, and any health-related actions should always be discussed with a qualified healthcare professional. Kisho does not endorse any specific therapy, organization, or clinical trial. Terms of use · Privacy policy
3-hydroxy-3-methylglutaryl-CoA synthase deficiency (HMG-CoA synthase deficiency) is a rare autosomal recessively inherited disorder of ketone body metabolism, reported in less than 20 patients to date, characterized clinically by episodes of decompensation (often associated with gastroenteritis or fasting) that present with vomiting, lethargy, hepatomegaly, non ketotic hypoglycemia and, in rare cases, coma. Patients are mostly asymptomatic between acute epidodes. HMG-CoA synthase deficiency requires an early diagnosis in order to avoid hypoglycemic crises that can lead to permanent brain damage or death.
Features include always present findings: Diarrhea, Elevated circulating aspartate aminotransferase concentration, Vomiting, and Increased circulating free fatty acid level and others; and very common findings: Encephalopathy, Hepatic steatosis, Seizure, and Enlarged liver (hepatomegaly) and others. 20 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Digestive system | 5 | Diarrhea, Hepatic steatosis, Vomiting |
HMGCS2 encodes 3-hydroxy-3-methylglutaryl-CoA synthase 2 (508 aa). Catalyzes the first irreversible step in ketogenesis, condensing acetyl-CoA to acetoacetyl-CoA to form HMG-CoA, which is converted by HMG-CoA reductase (HMGCR) into mevalonate Highest expression in Liver (748.5 TPM) and Colon Transverse (218.1 TPM).
3-hydroxy-3-methylglutaryl-CoA synthase deficiency is caused by mutations in the HMGCS2 gene on chromosome 1.
The HMGCS2 protein participates in Expression of HMGCS2, LONP1 degrades mitochondrial matrix proteins, and acetoacetyl-CoA+acetyl-CoA = HMG-CoA + CoASH pathways.
HMGCS2 is classified as a druggable target (Druggable Genome and Enzyme categories) with score 7.5.
Genetic testing for HMGCS2 is available. Testing is considered confirmatory for diagnosis.
Phenotype severity distribution: 8 always present features, 10 very common features, 2 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
No clinical trials have been registered for 3-hydroxy-3-methylglutaryl-CoA synthase deficiency.
15 publications have been identified in PubMed for 3-hydroxy-3-methylglutaryl-CoA synthase deficiency. Research spans Case Report / Case Series (50%), Review / Meta-Analysis (21%), and Basic Science / Preclinical (21%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 7 | 50% |
Data assembled from 7 of 12 sources · Last updated Sep 19, 2026, 6:55 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Lab test results | 4 | Elevated circulating aspartate aminotransferase concentration, Elevated circulating alanine aminotransferase concentration, Elevated LDH (tissue damage marker) (increased circulating lactate dehydrogenase concentration) |
Brain and nerves | 2 | Encephalopathy, Seizure |
Kidneys and urinary system | 1 | Elevated urinary 3-hydroxybutyric acid |
Metabolism | 1 | Metabolic acidosis |
Research summaries
3 |
21% |
Laboratory research | 3 | 21% |
Disease patterns and progression | 1 | 7% |
Omachi S (2026). [PMID: 41801188](https://pubmed.ncbi.nlm.nih.gov/41801188/). *FASEB journal : official publication of the Federation of American Societies for Experimental Biology*. [Case Report / Case Series]
Osundiji MA (2025). [PMID: 40855859](https://pubmed.ncbi.nlm.nih.gov/40855859/). *Annals of internal medicine. Clinical cases*. [Case Report / Case Series]
Vaseenon H (2025). [PMID: 40548098](https://pubmed.ncbi.nlm.nih.gov/40548098/). *JIMD reports*. [Review / Meta-Analysis]
Nguyen KN (2025). [PMID: 40004108](https://pubmed.ncbi.nlm.nih.gov/40004108/). *International journal of molecular sciences*. [Epidemiology / Natural History]
Alshami Y (2025). [PMID: 41383544](https://pubmed.ncbi.nlm.nih.gov/41383544/). *Clinical case reports*. [Case Report / Case Series]
Debray FG (2025). [PMID: 40554319](https://pubmed.ncbi.nlm.nih.gov/40554319/). *Molecular genetics and metabolism*. [Case Report / Case Series]
Koay YC (2025). [PMID: 40211954](https://pubmed.ncbi.nlm.nih.gov/40211954/). *Circulation research*. [Case Report / Case Series]
Otsuka Y (2025). [PMID: 39821719](https://pubmed.ncbi.nlm.nih.gov/39821719/). *FEBS open bio*. [Basic Science / Preclinical]
Decru B (2025). [PMID: 39798988](https://pubmed.ncbi.nlm.nih.gov/39798988/). *Molecular genetics and metabolism*. [Review / Meta-Analysis]
Huang S (2025). [PMID: 40331160](https://pubmed.ncbi.nlm.nih.gov/40331160/). *Journal of inflammation research*. [Basic Science / Preclinical]
AI-curated news mentioning 3-hydroxy-3-methylglutaryl-CoA synthase deficiency
Updated Jul 8, 2026
A new treatment for children aged 2 or older with sickle cell disease has been approved by the U.S. Food & Drug Administration. In a press release on Wednesday, the FDA announced it had approved Casgevy, the first gene therapy for children with sickle cell disease. (NewsNation) — A new treatment for children aged 2 or older with sickle cell disease has been approved by the Food & Drug Administration (FDA). In a Wednesday news release, the FDA announced it had approved Casgevy, the first gene therapy for children with the disease. “Casgevy is a gene therapy consisting of the patient’s own (autologous) hematopoietic (blood) stem cells, administered as a one-time single dose for intravenous infusion,” the release noted. “Pediatric patients as young as 2 years of age can now access a critical additional treatment option to treat these debilitating, life-threatening diseases,” Karim Mikhail, the acting director of the Center for Biologics Evaluation and Research, wrote. “These disorders carry a heavy burden for children and their families, affecting growth, development, and long-term health in profound ways,” Megha Kaushal, acting deputy director of the Office of Therapeutic Products in CBER, said in the release.