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Carnitine-acylcarnitine translocase (CACT) deficiency is a life-threatening, inherited disorder of fatty acid oxidation which usually presents in the neonatal period with severe hypoketotic hypoglycemia, hyperammonemia, cardiomyopathy and/or arrhythmia, hepatic dysfunction, skeletal muscle weakness, and encephalopathy.
Data assembled from 10 of 12 sources · Last updated Sep 20, 2026, 11:13 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about carnitine-acylcarnitine translocase deficiency
Features include always present findings: Hepatic steatosis, Cardiac arrest, Reduced circulating 6-pyruvoyltetrahydropterin synthase activity, and Reduced tissue carnitine-acylcarnitine translocase activity and others; and very common findings: Lethargy, Enlarged liver (hepatomegaly), Irritability, and Hyperammonemia and others. 43 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Heart and blood vessels | 8 | Cardiac arrest, Ventricular tachycardia, Bradycardia |
Digestive system | 4 | Hepatic steatosis, Enlarged liver (hepatomegaly), Elevated circulating hepatic transaminase concentration |
Lab test results | 4 | Elevated creatine kinase (muscle enzyme) (elevated circulating creatine kinase concentration), Elevated circulating hepatic transaminase concentration, Elevated creatine kinase after exercise |
Brain and nerves | 4 | Seizure, Irritability, Global developmental delay |
Muscles | 4 | Low muscle tone (hypotonia), Generalized hypotonia, Muscle weakness |
Lungs and breathing | 2 | Difficulty breathing (respiratory insufficiency), Sudden episodic apnea |
Pregnancy and birth | 1 | Neonatal hypoglycemia |
Head and neck | 1 | Microcephaly |
Eyes | 1 | Nystagmus |
Individuals with carnitine-acylcarnitine translocase (CACT) deficiency can experience variable clinical severity. To date, just over 100 individuals have been reported with CACT deficiency. Two phenotypes have been described: a severe neonatal-onset form and a later-onset form.
The clinical features of severe CACT deficiency generally present around age two days, prior to receipt of the newborn screening result. Clinical features include poor feeding, hypotonia, lethargy, arrhythmias, hypoketotic hypoglycemia, hyperammonemia, transaminitis, liver dysfunction with hepatomegaly, and rhabdomyolysis . Most individuals who have been reported did poorly .
Source: GeneReviews — "Carnitine-Acylcarnitine Translocase Deficiency"
SLC25A20 function has not been fully characterized.
Carnitine-acylcarnitine translocase deficiency is caused by mutations in the SLC25A20 gene on chromosome 3.
Neonatal-Onset Form
(formerly c.261-10TG or -10TG intron 2). Homozygosity for this pathogenic splice site variant is associated with the severe neonatal-onset form .
Affected individuals who have one pathogenic c.199-10TG allele and another pathogenic variant on the other allele tend to have severe clinical features, with no apparent correlation to survival .
The c.199-10TG pathogenic variant is the most common pathogenic variant described to date, and the most common pathogenic variant observed in individuals of East Asian and Southeast Asian descent, suggesting a possible founder effect .
(p.Phe91fs). Homozygosity for this pathogenic deletion of Turkish origin has been correlated with the severe neonatal-onset form of CACT deficiency .
Source: GeneReviews — "Carnitine-Acylcarnitine Translocase Deficiency"
Carnitine acylcarnitine translocase (CACT) is a part of the carnitine shuttle that is localized to the inner mitochondrial membrane. It transfers long-chain acylcarnitines formed by the action of carnitine palmitoyl-transferase I (CPT1) in the outer mitochondrial membrane into the mitochondrial matrix in exchange for free carnitine. These acylcarnitines are then converted into acyl-CoA by carnitine palmitoyl-transferase 2 (CPT2) to enter -oxidation . No consensus clinical diagnostic criteria for carnitine-acylcarnitine translocase (CACT) deficiency have been published.
Scenario 1: Abnormal newborn screening (NBS) result. NBS for CACT deficiency is primarily based on quantification of the acylcarnitine analytes on dried blood spots by tandem mass spectrometry. See also ACM...
Source: GeneReviews — "Carnitine-Acylcarnitine Translocase Deficiency"
Table 3. Genes of Interest in the Differential Diagnosis of Carnitine-Acylcarnitine Translocase Deficiency
Gene | Disorder | MOI | Laboratory Findings | Comment |
|---|---|---|---|---|
Very long-chain acyl-CoA dehydrogenase (VLCAD) deficiency | AR | Hypoketotic hypoglycemia, hyperammonemia, hyperCKemia (myopathic form), transaminitis, altered hepatic synthetic function (hepatic form); C14, C14:1, C14:2 C12 in acylcarnitine profile | Early-onset cardiac multiorgan failure in VLCAD deficiency can be reminiscent of CACT deficiency, but acylcarnitine profile is quite different. CPT2 |
Carnitine-acylcarnitine translocase deficiency is included in newborn screening programs (Carnitine Palmitoyltransferase Type I Deficiency) in 28 states.
Genetic testing for SLC25A20 is available. Testing is considered confirmatory for diagnosis.
No approved treatments are currently available for carnitine-acylcarnitine translocase deficiency. The disease remains an area of unmet medical need.
No consensus clinical practice guidelines for carnitine-acylcarnitine translocase (CACT) deficiency have been published. When CACT deficiency is suspected during the diagnostic evaluation (i.e., due to elevated C16 and C18:1 on acylcarnitine profile), metabolic treatment should be initiated immediately. Development and evaluation of treatment plans, training and education of affected individuals and their families, and avoidance of side effects of dietary treatment (i.e., malnutrition, growth failure, obesity) require a multidisciplinary approach including multiple subspecialists, with oversight and expertise from a specialized metabolic center.
To establish the extent of disease and needs in an individual diagnosed with CACT deficiency, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 4.
Recommended Evaluations Following Initial Diagnosis of Carnitine-Acylcarnitine Translocase (CACT) Deficiency
Evaluation | Comment
Consultation w/metabolic physician / biochemical geneticist specialist metabolic dietitian1 | • Transfer to specialist center w/experience in mgmt of inherited metabolic diseases (strongly recommended)
Consider short hospitalization at a center of expertise for inherited metabolic conditions to provide caregivers w/detailed education (natural history, maintenance emergency treatment, prognosis, risks for acute encephalopathic crises).
Source: GeneReviews — "Carnitine-Acylcarnitine Translocase Deficiency"
Avoid the following:
Prolonged fasting
Catabolic illness (fever, intercurrent infection)
Inadequate caloric provision during other stressors, especially when fasting is involved (surgery or procedure requiring fasting/anesthesia)
Strenuous physical activity
Anesthetics that contain high doses of long-chain fatty acids, such as propofol, although use for short procedures is likely to be tolerated
Source: GeneReviews — "Carnitine-Acylcarnitine Translocase Deficiency"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Carnitine-Acylcarnitine Translocase Deficiency"
1 trial found
In addition to regular evaluations by a metabolic specialist and metabolic dietitian, the following are recommended. Table 9. Recommended Surveillance for Individuals with Carnitine-Acylcarnitine Translocase (CACT) Deficiency
Manifestation | Evaluation | Frequency/Comment |
|---|---|---|
Poor growth | Measure growth head circumference. | At each visit Delayed acquisition of developmental milestones |
Hypoglycemia | Serum glucose levels | Lab monitoring frequency should depend on patient's metabolic status. In general:; Neonates: every 2 wks; Infants age 2 mos – 1 yr: every 1-3 mos; Children ≥ 1 year: every 3-6 mos Hyperammonemia |
Arrhythmias | EKG or 24-hr Holter test | Periodically as clinically indicated |
Cardiomyopathy or cardiac dysfunction | Echocardiogram | Annually or as clinically indicated |
Renal insufficiency | Plasma creatinine, BUN, electrolytes /or cystatin C level | As clinically indicated Nutritional monitoring for anemia, protein malnutrition, micronutrient |
or vitamin deficiencies | CBC, ferritin level, prealbumin, CRP1, essential fatty acids, calcium, magnesium, phosphate, copper, zinc, selenium, folate, vitamins A, D, E, B12 levels | Annually after age 1 yr New neurologic symptoms |
or somnolence | Consider EEG or neuroimaging (e.g., brain MRI). | As clinically indicated ALT = alanine aminotransferase; AST = aspartate aminotransferase; BUN = blood urea nitrogen; CBC = complete blood count; CK = creatine kinase; CRP = C-reactive protein 1. |
Source: GeneReviews — "Carnitine-Acylcarnitine Translocase Deficiency"
Phenotype severity distribution: 5 always present features, 20 very common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
1 clinical trial registered. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
9 publications have been identified in PubMed for carnitine-acylcarnitine translocase deficiency. Research spans Case Report / Case Series (56%), Basic Science / Preclinical (33%), and Gene Therapy / Novel Therapeutics (11%).
Nyuzuki H (2026). [PMID: 42285976](https://pubmed.ncbi.nlm.nih.gov/42285976/). *Hum Genome Var*. [Case Report / Case Series]
Gan Z (2025). [PMID: 39732347](https://pubmed.ncbi.nlm.nih.gov/39732347/). *Gene*. [Basic Science / Preclinical]
Liu X (2025). [PMID: 40104443](https://pubmed.ncbi.nlm.nih.gov/40104443/). *Research (Washington, D.C.)*. [Case Report / Case Series]
Trinh NB (2025). [PMID: 41018717](https://pubmed.ncbi.nlm.nih.gov/41018717/). *Oman medical journal*. [Case Report / Case Series]
Babazade H (2025). [PMID: 40092581](https://pubmed.ncbi.nlm.nih.gov/40092581/). *Molecular genetics and metabolism reports*. [Case Report / Case Series]
Thunga C (2024). [PMID: 38628283](https://pubmed.ncbi.nlm.nih.gov/38628283/). *Autopsy & case reports*. [Basic Science / Preclinical]
Jing J (2024). [PMID: 38490313](https://pubmed.ncbi.nlm.nih.gov/38490313/). *Cardiovascular pathology : the official journal of the Society for Cardiovascular Pathology*. [Gene Therapy / Novel Therapeutics]
Zhang Q (2024). [PMID: 38565514](https://pubmed.ncbi.nlm.nih.gov/38565514/). *Zhonghua yi xue yi chuan xue za zhi = Zhonghua yixue yichuanxue zazhi = Chinese journal of medical genetics*. [Case Report / Case Series]
Hishida R (2024). [PMID: 39650084](https://pubmed.ncbi.nlm.nih.gov/39650084/). *Molecular genetics and metabolism reports*. [Basic Science / Preclinical]
— |
Carnitine palmitoyltransferase II (CPT II) deficiency | AR | Hypoketotic hypoglycemia, hyperammonemia, hyperCKemia; C16 C18:1 in serum/plasma acylcarnitines. | CPT2 CACT deficiency have similar acylcarnitine profiles are indistinguishable at presentation at birth through NBS. Molecular genetic testing /or enzyme activity is required. TANGO2 | — |
TANGO2-related metabolic encephalopathy and arrhythmias | AR | Hypoglycemia, lactic acidosis, mild hyperammonemia, hyperCKemia., transaminitis; C10 or C14:1 in acylcarnitine profile (during acute episode) marked ketoacidosis w/lactic acidosis in urine organic acids | TANGO2-related metabolic encephalopathy is assoc w/ risk for motor intellectual disability, brain abnormalities, hypothyroidism, seizures, adrenal insufficiency. Onset age is variable. | — |
Source: GeneReviews — "Carnitine-Acylcarnitine Translocase Deficiency"