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Systemic primary carnitine deficiency (SPCD) is a potentially lethal disorder of fatty acid oxidation characterized classically by early childhood onset cardiomyopathy often with weakness and hypotonia, failure to thrive and recurrent hypoglycemic hypoketotic seizures and/or coma.
Features include always present findings: Decreased circulating carnitine concentration; and very common findings: Enlarged liver (hepatomegaly), Muscle weakness, Confusion, and Vomiting and others. 40 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Muscles | 7 | Myopathy, Low muscle tone (hypotonia), Generalized hypotonia |
Brain and nerves | 6 | Encephalopathy, Global developmental delay, Excessive daytime somnolence |
Digestive system | 6 | Enlarged liver (hepatomegaly), Diarrhea, Decreased carnitine level in liver |
Heart and blood vessels | 6 | Endocardial fibroelastosis, Enlarged heart (cardiomegaly), Thickened heart muscle (hypertrophic cardiomyopathy) |
Lab test results | 5 | Elevated creatine kinase (muscle enzyme) (elevated circulating creatine kinase concentration), Elevated circulating alanine aminotransferase concentration, Decreased carnitine level in liver |
Growth and development | 1 | Failure to thrive |
Lungs and breathing | 1 | Respiratory distress |
The clinical manifestations of primary carnitine deficiency (PCD) can vary widely with respect to age of onset, organ involvement, and severity. The broad clinical spectrum ranges from metabolic decompensation in infancy to cardiomyopathy in childhood, fatigability in adulthood, and absence of clinical manifestations. PCD has typically been associated with an infantile metabolic presentation that usually presents before age two years in about half of untreated affected individuals. The remaining half have a childhood myopathic presentation that typically presents between ages two and four years with dilated cardiomyopathy, hypotonia, muscle weakness, and elevated creatine kinase (CK). However, adults with PCD and mild or no manifestations are likely underdiagnosed, making it difficult to determine the relative proportion of these presentations . Table 3. Primary Carnitine Deficiency: Select Features
Feature | Infantile Early Diagnosis Treatment | Untreated Symptomatic Individual |
|---|---|---|
Infantile onset | Childhood onset |
SLC22A5 function has not been fully characterized.
Systemic primary carnitine deficiency disease is caused by mutations in the SLC22A5 gene on chromosome 5.
No genotype-phenotype correlations have been identified. Nonsense and frameshift variants in SLC22A5 are more prevalent in symptomatic individuals. Missense variants are more prevalent in asymptomatic individuals .
Source: GeneReviews — "Primary Carnitine Deficiency"
Suggestive Findings A diagnosis of primary carnitine deficiency (PCD) may be suspected due to an abnormal newborn screening result prior to onset of suggestive findings or may be considered because of symptoms of PCD . Scenario 1: Abnormal Newborn Screening (NBS) Result NBS for PCD is primarily based on use of dried blood spots collected between 24 hours and 72 hours after birth to quantify free carnitine (C0) concentration by tandem mass spectrometry. (For information on NBS by state in the United States, see www.newbornscreening.hrsa.gov.) Low concentration of free carnitine can identify (1) an infant with PCD, (2) a mother with PCD, or (3) both. NBS can identify a mother with PCD because transfer of carnitine across the placenta from an affected mother to her fetus results in a low plasma carnitine concentration in her newborn. Thus, an infant who does not have PCD but is born to a mother who has PCD can have low plasma carnitine concentrations shortly after birth, resulting in a false positive NBS result . Note: (1) NBS for PCD has low positive predictive value (e.g., 4.7% in California ). There are many factors that may affect NBS for PCD, including maternal carnitine deficiency, prematurity, pivalic acid-containing antibiotics, and some other inborn errors of metabolism. At least one country (New Zealand) has discontinued NBS for this disorder because of its very low sensitivity and positive predictive value . (2) In the US, most NBS laboratories determine their own cutoff levels for test results that are considered to be out of range and require further laboratory testing because out-of-range NBS results individually are not entirely specific to PCD. Positive NBS results (i.e., low blood concentrations of free carnitine) require evaluation of the newborn and mother as soon as possible and no later than three days after birth. • See and on how to make an analyte diagnosis or confirm a diagnosis molecularly. • For recommendations on presumptive treatment of affected newborns while awaiting diagnosis confirmation to prevent irreversible neurocognitive impairment, consult a metabolic specialist to discuss immediate treatment for PCD with oral levocarnitine supplementation and other recommended care. • If a metabolic specialist is not available, begin treatment for PCD with oral levocarnitine supplementation (typically 100-200 mg/kg/day, divided in three doses; see ) to prevent metabolic decompensation. Table 1. Primary Carnitine Deficiency: Testing Recommended at the Time of Diagnosis of Low Carnitine Blood Levels via NBS
Laboratory Test | Results | Comments |
|---|---|---|
Free total blood urine carnitine concentrations1 | Extremely reduced plasma free, acylated, total (i.e., the sum of free acylated) carnitine concentrations (i.e., 10% of controls) are highly suggestive of PCD. | Plasma carnitine concentrations should be measured in all mothers of infants found to have low free carnitine levels on NBS to determine if the mother /or infant have PCD. |
Plasma acylcarnitine profile | Infants w/PCD have low plasma concentration of all acylcarnitines therefore plasma acylcarnitine profile may not be successful. If a profile can be generated, there is typically no specific elevation of any acylcarnitine species. | Useful to rule out other causes of low free carnitine concentrations, incl organic acidemias defects of fatty acid oxidation (See .) |
Urine organic acid analysis | Nondiagnostic for PCD | Useful to rule out other causes of low carnitine levels, incl organic acidemias defects of fatty acid oxidation (See .); Note: Nonspecific dicarboxylic aciduria occurs in some persons w/PCD is common in fatty acid oxidation disorders w/acute decompensation. PCD = primary carnitine deficiency 1. |
Source: GeneReviews — "Primary Carnitine Deficiency"
Primary carnitine deficiency (PCD) needs to be differentiated from secondary carnitine deficiency associated with other inherited metabolic disorders, including organic acidemias and fatty acid oxidation defects , and acquired conditions . Genetic disorders. Free and total carnitines, a plasma acylcarnitine profile, and urine organic acid analysis can be useful in differentiating fatty acid oxidation disorders and organic acidemias from PCD.
Table 4.
Selected Autosomal Recessive Disorders Associated with Secondary Carnitine Deficiency in the Differential Diagnosis of Primary Carnitine Deficiency
Gene(s) | Disorder | Biochemical Phenotype
| Medium-chain acyl-CoA dehydrogenase (MCAD) deficiency | Elevated C8, C10, C10:1; increased excretion of dicarboxylic acids
| Short-chain acyl-CoA d...
Source: GeneReviews — "Primary Carnitine Deficiency"
Genetic testing for SLC22A5 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for systemic primary carnitine deficiency disease has been reported in the published literature.
1 FDA-approved treatment is available for systemic primary carnitine deficiency disease, including LEVOCARNITINE (CARNITOR, approved 1992).
Brand Name | Generic Name | Mechanism | Approved | Market Status |
|---|---|---|---|---|
CARNITOR | LEVOCARNITINE | — | 1992 | Available |
No clinical practice guidelines for primary carnitine deficiency (PCD) have been published. In the absence of published guidelines, the following recommendations are based on the authors' personal experience managing individuals with this disorder.
To establish the extent of disease and needs in an individual diagnosed with PCD, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 5.
Primary Carnitine Deficiency: Recommended Evaluations Following Initial Diagnosis
Evaluation | Comment
| Transfer to specialist center w/experience in mgmt of inherited metabolic diseases (strongly recommended)
| Echocardiogram electrocardiogram
| • CK liver transaminases
Post-prandial blood glucose concentration
Plasma free/total carnitine concentration following initiation of treatment
| To ensure understanding of diagnosis assess parental/ affected person's coping skills as needed
Avoid the following:
Prolonged fasting beyond age-appropriate periods
Catabolic illness (using measures to avoid intercurrent infection, such as being up to date on vaccinations with anticipation of likelihood of febrile illness post vaccination, wearing a mask in crowded environments, considering alternatives to daycare, recognizing symptoms early)
Inadequate caloric provision during other stressors, especially when fasting is involved (surgery or procedure requiring fasting/anesthesia)
Source: GeneReviews — "Primary Carnitine Deficiency"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Primary Carnitine Deficiency"
1 trial found
In addition to regular evaluations by a metabolic specialist and metabolic dietician, the evaluations summarized in are recommended to monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations. Table 10. Primary Carnitine Deficiency: Recommended Surveillance
Concern | Evaluation | Frequency |
|---|---|---|
Carnitine deficiency | Measurement of plasma free/total carnitine by experienced metabolic physician w/adjustments in carnitine supplementation based on age, weight, diet | Frequently until levels reach normal range; then every 4 mos during infancy early childhood, every 6 mos in older children, annually in adults |
Growth | Measurement of height, weight, head circumference | At each visit throughout childhood, esp if poorly treated or untreated |
Development | Assessment of developmental milestones | At each visit throughout childhood |
Cognition | Neuropsychological testing using age-appropriate standardized assessment testing | As needed |
Family/Community | Assess family need for social work support (e.g., palliative/respite care, home nursing, other local resources), care coordination, or follow-up genetic counseling if new questions arise (e.g., family planning). | At each visit |
Source: GeneReviews — "Primary Carnitine Deficiency"
Phenotype severity distribution: 1 always present feature, 9 very common features, 3 common features.
1 clinical trial registered, 1 recruiting. Interventions under study include drug therapy. Pipeline includes 1 EARLY_PHASE1. Research is primarily sponsored by academic and government institutions.
84 publications have been identified in PubMed for systemic primary carnitine deficiency disease. Research spans Epidemiology / Natural History (25%), Basic Science / Preclinical (20%), and Case Report / Case Series (19%).
Research Type | Count | % of Total |
|---|---|---|
Disease patterns and progression | 21 | 25% |
Laboratory research | 17 | 20% |
Patient case studies | 16 | 19% |
Research summaries | 15 | 18% |
Clinical study results | 8 | 10% |
Testing and diagnosis research | 5 | 6% |
Other research | 1 | 1% |
New treatment approaches | 1 | 1% |
Lauwers C (2026). [PMID: 41572315](https://pubmed.ncbi.nlm.nih.gov/41572315/). *Critical care (London, England)*. [Epidemiology / Natural History]
Tomlin S (2026). [PMID: 42243603](https://pubmed.ncbi.nlm.nih.gov/42243603/). *Pharmaceut Med*. [Case Report / Case Series]
Lin Y (2026). [PMID: 41892025](https://pubmed.ncbi.nlm.nih.gov/41892025/). *Int J Neonatal Screen*. [Basic Science / Preclinical]
Gordon J (2026). [PMID: 41498387](https://pubmed.ncbi.nlm.nih.gov/41498387/). *JPEN. Journal of parenteral and enteral nutrition*. [Epidemiology / Natural History]
Chen J (2026). [PMID: 40864195](https://pubmed.ncbi.nlm.nih.gov/40864195/). *Pediatric nephrology (Berlin, Germany)*. [Epidemiology / Natural History]
Guan K (2026). [PMID: 42159457](https://pubmed.ncbi.nlm.nih.gov/42159457/). *Adv Sci (Weinh)*. [Basic Science / Preclinical]
Gong L (2026). [PMID: 41974402](https://pubmed.ncbi.nlm.nih.gov/41974402/). *Clin Chim Acta*. [Diagnostic / Biomarker]
Peng K (2026). [PMID: 41795954](https://pubmed.ncbi.nlm.nih.gov/41795954/). *Biology of reproduction*. [Basic Science / Preclinical]
Kasagi Y (2026). [PMID: 42004901](https://pubmed.ncbi.nlm.nih.gov/42004901/). *PCN Rep*. [Case Report / Case Series]
Hidalgo Mayoral I (2026). [PMID: 41022664](https://pubmed.ncbi.nlm.nih.gov/41022664/). *Clinical genetics*. [Epidemiology / Natural History]
Data assembled from 10 of 12 sources · Last updated Sep 18, 2026, 5:51 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Typical age at presentation/onset | Newborn | 3 mos-2 yrs |
Metabolic decompensation1 | Rare w/appropriate treatment | + |
Hepatomegaly | + | + |
Cardio(myo)pathy | ± | + |
Neurologic manifestations | + | + |
Source: GeneReviews — "Primary Carnitine Deficiency"
| To obtain a pedigree inform affected persons their families re nature, MOI, implications of PCD to facilitate medical personal decision making
CK = creatine kinase; MOI = mode of inheritance; PCD = primary carnitine deficiency
1. Medical geneticist, certified genetic counselor, certified advanced genetic nurse
Treatment of Manifestations
Source: GeneReviews — "Primary Carnitine Deficiency"