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Carnitine palmitoyltransferase 1A (CPT-1A) deficiency is an inborn error of metabolism that affects mitochondrial oxidation of long chain fatty acids (LCFA) in the liver and kidneys, and is characterized by recurrent attacks of fasting-induced hypoketotic hypoglycemia and risk of liver failure.
Features include always present findings: Motor delay, Elevated circulating alanine aminotransferase concentration, Hypoketotic hypoglycemia, and Diarrhea and others; and very common findings: Seizure, Low muscle tone (hypotonia), Elevated circulating hepatic transaminase concentration, and Atypical behavior and others. 37 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Brain and nerves | 7 | Seizure, Hyporeflexia, Recurrent encephalopathy |
Digestive system | 6 | Hepatic steatosis, Enlarged liver (hepatomegaly), Elevated circulating hepatic transaminase concentration |
Muscles | 5 | Low muscle tone (hypotonia), Generalized hypotonia, Muscle weakness |
Lab test results | 4 | Elevated creatine kinase (muscle enzyme) (elevated circulating creatine kinase concentration), Elevated circulating alanine aminotransferase concentration, Elevated circulating hepatic transaminase concentration |
Heart and blood vessels | 4 | Arrhythmia, Enlarged heart (cardiomegaly), Thickened heart muscle (hypertrophic cardiomyopathy) |
Metabolism | 2 | Transient hyperlipidemia, Abnormality of metabolism/homeostasis |
Kidneys and urinary system | 1 | Renal tubular acidosis |
Bones and joints | 1 | Skeletal muscle atrophy |
The mitochondrial membrane protein encoded by CPT1A enables oxidation of long-chain fatty acyl-coenzyme A molecules in the liver to provide an alternative source of energy when liver glycogen reserves have been significantly reduced, most often during fasting or intercurrent illness . This pathway fuels ketogenesis for metabolism in other tissues that cannot oxidize fatty acids. Thus, clinical manifestations of CPT1A deficiency usually occur with a febrile or gastrointestinal illness when energy demands are increased. Although the precipitating illness may be a relatively common infectious disease, onset of manifestations is usually rapid. Age of onset of manifestations can vary from the newborn period to adulthood, and some individuals are asymptomatic.
Source: GeneReviews — "Carnitine Palmitoyltransferase 1A Deficiency"
CPT1A encodes carnitine palmitoyltransferase 1A (773 aa). Catalyzes the transfer of the acyl group of long-chain fatty acid-CoA conjugates onto carnitine, an essential step for the mitochondrial uptake of long-chain fatty acids and their subsequent beta-oxidation in the mitochondrion. Highest expression in Colon Transverse (52.6 TPM) and Artery Aorta (52.4 TPM).
Carnitine palmitoyl transferase 1A deficiency is caused by mutations in the CPT1A gene on chromosome 11.
The CPT1A protein participates in CPT1A transfers PALM to CAR, Expression of Carnitine O-palmitoyltransferase 1 CPT1A, and RORA and EP300 bind the Carnitine O-palmitoyltransferase 1 (CPT1A) gene pathways.
CPT1A is classified as a druggable target (Druggable Genome and Enzyme categories) with score 4.0.
CPT1A pathogenic variant , observed in the Inuit population of the Arctic and sub-Arctic, is associated with a partial loss of CPT1 function but does not appear to cause acute hepatic failure . In fact, most children homozygous for this variant never develop any manifestations of CPT1A deficiency. However, evidence suggests that infants who are homozygous for p.Pro479Leu have impaired fasting tolerance and increased risk of infant mortality . Many individuals with this variant may be missed by NBS with acylcarnitine profile alone, so Alaskan NBS programs incorporate sequencing for this variant (see health.alaska.gov). In a study using whole-genome high-coverage sequence data of Arctic populations, p.
Source: GeneReviews — "Carnitine Palmitoyltransferase 1A Deficiency"
No consensus clinical diagnostic criteria for carnitine palmitoyltransferase 1A (CPT1A) deficiency have been published.
Suggestive Findings
Source: GeneReviews — "Carnitine Palmitoyltransferase 1A Deficiency"
A number of other fetal fatty acid oxidation defects are associated with a similar risk to the heterozygous mother of developing acute fatty liver of pregnancy, typically in the third trimester, prompting further investigation of the newborn for a fatty acid oxidation defect. The absence (or paucity) of ketone bodies during a period of hypoglycemia should increase suspicion for one of the disorders of fatty acid oxidation or the carnitine cycle, including carnitine palmitoyltransferase 1A (CPT1A) deficiency. Selected genes of interest in the differential diagnosis of CPT1A deficiency are listed in . Table 2. Selected Genes of Interest in the Differential Diagnosis of Carnitine Palmitoyltransferase 1A Deficiency
Gene | Disorder | MOI | Comment |
|---|---|---|---|
Medium-chain acyl-CoA dehydrogenase (MCAD) deficiency | AR | Because the CPT1A isoform is primarily expressed in liver, CPT1A deficiency is clinically more closely related to disorders of fatty acid oxidation ketogenesis disorders w/hepatic phenotypes. | — |
HMGCL | HMG-CoA lyase deficiency (OMIM 246450) | AR |
Genetic testing for CPT1A is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for carnitine palmitoyl transferase 1A deficiency has been reported in the published literature.
No approved treatments are currently available for carnitine palmitoyl transferase 1A deficiency. The disease remains an area of unmet medical need.
No clinical practice guidelines for carnitine palmitoyltransferase 1A (CPT1A) deficiency have been published. In the absence of published consensus guidelines, the following recommendations are based on available evidence and literature on the subject. When CPT1A deficiency is suspected during the diagnostic evaluation (for example, because of a suggestive carnitine and acylcarnitine profile; see ), metabolic treatment including fasting precautions should be initiated immediately. Development and evaluation of treatment plans, training and education of affected individuals and their families, and avoidance of side effects of dietary treatment (e.g., malnutrition, growth failure) require a multidisciplinary approach including multiple subspecialists, with oversight and expertise from a specialized metabolic center. Guidelines and current management strategies for the treatment of CPT1A deficiency and other long-chain fatty acid oxidation disorders can be found at www.newbornscreening.info and (full text). The British Inherited Metabolic Disease Group (BIMDG) website has a specific emergency management protocol for CPT1A deficiency (see Emergency Guides - BIMDG).
To establish the extent of disease and needs in an individual diagnosed with CPT1A deficiency, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 3.
Source: GeneReviews — "Carnitine Palmitoyltransferase 1A Deficiency"
Avoid fasting, including during periods of preparation and recovery from planned surgery or sedation (see CPT I Deficiency — New England Consortium of Metabolic Programs). During periods of fasting, long-chain fatty acids are typically broken down into ketones and provide an important energy source for the liver and other tissues. Due to the metabolic block caused by this disorder, ketone production is limited, and fasting can trigger hypoketotic hypoglycemia. Potentially hepatotoxic agents such as valproate and salicylate should be used with caution if there is evidence of hepatic dysfunction . Adverse effects of pharmacologic agents have not been reported in individuals with CPT1A deficiency. Avoid viral or bacterial infections. Avoid overfeeding in individuals without acute illness to reduce long-term risk of obesity.
Source: GeneReviews — "Carnitine Palmitoyltransferase 1A Deficiency"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Carnitine Palmitoyltransferase 1A Deficiency"
1 trial found
Table 7. Carnitine Palmitoyltransferase 1A Deficiency: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
Hepatology | Liver enzymes (AST, ALT, ALP), functional liver tests (incl PT PTT) | As clinically indicated to assess for liver failure |
Nephrology | BUN, serum creatinine concentration, urinalysis for urine protein | As clinically indicated to assess for renal tubular acidosis |
Gastrointestinal | Assess for gastrointestinal side effects of triheptanoin or MCT oil (e.g., diarrhea) | At each visit based on treatment as clinically indicated |
Development | Assess developmental educational progress w/referrals for social services, physical therapy, occupational therapy, speech language services as needed | At each visit throughout childhood adolescence |
Source: GeneReviews — "Carnitine Palmitoyltransferase 1A Deficiency"
Phenotype severity distribution: 9 always present features, 11 very common features, 6 common features.
Estimated prevalence: <1 in 1,000,000 (VERY_RARE).
1 clinical trial registered. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
10 publications have been identified in PubMed for carnitine palmitoyl transferase 1A deficiency. Research spans Basic Science / Preclinical (44%), Diagnostic / Biomarker (22%), and Gene Therapy / Novel Therapeutics (22%).
Zhang D (2026). [PMID: 41694586](https://pubmed.ncbi.nlm.nih.gov/41694586/). *International journal of biological sciences*. [Gene Therapy / Novel Therapeutics]
Yılmaz-Gümüş E (2026). [PMID: 41475178](https://pubmed.ncbi.nlm.nih.gov/41475178/). *Molecular genetics and metabolism*. [Basic Science / Preclinical]
Lin Y (2025). [PMID: 40776473](https://pubmed.ncbi.nlm.nih.gov/40776473/). *Clinical and molecular hepatology*. [Basic Science / Preclinical]
Nordlie SM (2025). [PMID: 41279021](https://pubmed.ncbi.nlm.nih.gov/41279021/). *bioRxiv : the preprint server for biology*. [Basic Science / Preclinical]
Grünert SC (2025). [PMID: 41017303](https://pubmed.ncbi.nlm.nih.gov/41017303/). *Journal of pediatric endocrinology & metabolism : JPEM*. [Diagnostic / Biomarker]
Miguel V (2025). [PMID: 40440450](https://pubmed.ncbi.nlm.nih.gov/40440450/). *Kidney360*. [Diagnostic / Biomarker]
Mirza N (2024). [PMID: 39086449](https://pubmed.ncbi.nlm.nih.gov/39086449/). *Journal of pediatric genetics*. [Gene Therapy / Novel Therapeutics]
Nandi I (2024). [PMID: 39097623](https://pubmed.ncbi.nlm.nih.gov/39097623/). *Nature communications*. [Basic Science / Preclinical]
Helsley RN (2024). [PMID: 39763810](https://pubmed.ncbi.nlm.nih.gov/39763810/). *bioRxiv : the preprint server for biology*. [Case Report / Case Series]
Data assembled from 9 of 12 sources · Last updated Sep 18, 2026, 2:35 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
—
HMGCS2 | HMG-CoA synthase deficiency (OMIM 605911) | AR | — |
350 genes1 | Disorders of oxidative phosphorylation (See Primary Mitochondrial Disorders Overview.) | ARADMTXL | In the absence of manifestations involving muscle or heart, the acute hepatic presentation of CPT1A deficiency cannot be clinically distinguished from other defects of long-chain fatty acid oxidation conditions that present as a Reye-like illness. ACADVL |
AR Multiple genes incl:G6PC1SLC37A43 | Disorders of gluconeogenesis incl glycogen storage disease type I | AR | — |
Multiple genes incl:MCEEMMAAMMABMMADHCMMUTPCCAPCCB4 | Organic acidurias such as isolated methylmalonic acidemia propionic acidemia | AR SLC25A20 | Carnitine-acylcarnitine translocase deficiency AD = autosomal dominant; AR = autosomal recessive; CoA = coenzyme A; CPT1A = carnitine palmitoyltransferase 1A; HMG = 3-hydroxy-3-methylglutaryl; MT = mitochondrial; MOI = mode of inheritance; XL = X-linked 1. |
Source: GeneReviews — "Carnitine Palmitoyltransferase 1A Deficiency"