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Carnitine palmitoyltransferase II (CPT II) deficiency is an inherited metabolic disorder that affects mitochondrial oxidation of long chain fatty acids (LCFA). Three forms of CPT II deficiency have been described: a myopathic form, a severe infantile form and a neonatal form.
Data assembled from 6 of 12 sources · Last updated Oct 4, 2026, 6:17 AM UTC
European rare disease database
Genetic and Rare Diseases Info Center
Features include very common findings: Muscle weakness, Myalgia, and Reduced tissue carnitine O-palmitoyltransferase 2 activity; and common findings: Myoglobinuria, High blood fat levels (hyperlipidemia), Myopathy, and Elevated creatine kinase (muscle enzyme) (elevated circulating creatine kinase concentration) and others. 42 total HPO annotations.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Muscles | 8 | Muscle weakness, Myalgia, Myopathy |
Brain and nerves | 6 | Exercise intolerance, Seizure, Headache |
Kidneys and urinary system | 5 | Tubulointerstitial nephritis, Stage 5 chronic kidney disease, Renal tubular epithelial necrosis |
Digestive system | 4 | Enlarged liver (hepatomegaly), Episodic abdominal pain, Hepatic failure |
Lab test results | 2 | Elevated creatine kinase (muscle enzyme) (elevated circulating creatine kinase concentration), Elevated circulating acylcarnitine concentration |
Heart and blood vessels | 2 | Heart muscle disease (cardiomyopathy), Arrhythmia |
Metabolism | 1 | High blood fat levels (hyperlipidemia) |
Lungs and breathing | 1 | Neonatal respiratory distress |
Pregnancy and birth | 1 | Neonatal respiratory distress |
Age of onset: at birth.
Three carnitine palmitoyltransferase II (CPT II) deficiency phenotypes are recognized: a lethal neonatal form; a severe infantile hepatocardiomuscular form; and a myopathic form, in which onset ranges from infancy to adulthood.
Liver failure, hypoketotic hypoglycemia, cardiomyopathy, respiratory distress, and/or cardiac arrhythmias occur. Affected individuals have liver calcifications and cystic dysplastic kidneys . Neuronal migration defects including cystic dysplasia of the basal ganglia have been reported . Among 19 individuals with the neonatal phenotype a characteristic pattern of malformations was seen.
Source: GeneReviews — "Carnitine Palmitoyltransferase II Deficiency"
Carnitine palmitoyltransferase II (CPT II) deficiency should be suspected in individuals with the following clinical features (by age) and supportive laboratory findings.
Clinical features (by age)
Source: GeneReviews — "Carnitine Palmitoyltransferase II Deficiency"
Elevated acylcarnitines. The differential diagnosis of an elevation of C12 to C18 acylcarnitines, notably of C16 and C18:1, includes glutaric acidemia type II (see Multiple Acyl-CoA Dehydrogenase Deficiency) and carnitine-acylcarnitine translocase deficiency, which can be excluded by additional screening of urinary metabolites such as glutaric and 3-OH-glutaric acid.
Carnitine-acylcarnitine translocase (CACT) deficiency. The neonatal phenotype of CACT deficiency, one of the most severe and usually lethal mitochondrial fatty-acid oxidation abnormalities, is characterized by hypoketotic hypoglycemia, hyperammonemia, cardiac abnormalities, and early death.
Source: GeneReviews — "Carnitine Palmitoyltransferase II Deficiency"
Biomarker and diagnostic research for carnitine palmitoyltransferase II deficiency has been reported in the published literature.
No approved treatments are currently available for carnitine palmitoyltransferase II deficiency. The disease remains an area of unmet medical need.
To establish the extent of disease and needs in an individual diagnosed with carnitine palmitoyltransferase II (CPT II) deficiency, the following are recommended:
Neurologic examination
Strength testing
Review of dietary association of symptoms
Consultation with a clinical geneticist and/or genetic counselor
Current treatment for long-chain fatty-acid oxidation disorders:
Avoid known triggers.
Reduce the amount of long-chain dietary fat while covering the need for essential fatty acids.
Provide carnitine to convert potentially toxic long-chain acyl-CoAs to acylcarnitines.
Provide a large fraction of calories as carbohydrates to reduce body fat utilization and prevent hypoglycemia.
Provide approximately one third of the calories as even-chain medium chain triglycerides (MCT). Metabolism of the eight to ten carbon fatty acids in MCT oil, for example, is independent of CPT I, carnitine-acylcarnitine translocase, CPT II, very long-chain acyl-CoA dehydrogenase (VLCAD), trifunctional protein, and long-chain hydroxy-acyl-CoA dehydrogenase deficiency (LCHAD) enzyme activities.
Appropriate measures include the following:
Infusions of glucose during intercurrent infections to prevent catabolism
Note: Oral glucose cannot achieve this effect.
Source: GeneReviews — "Carnitine Palmitoyltransferase II Deficiency"
Extended fasting and prolonged exercise are to be avoided. Reports of medication-induced side effects in individuals with CPT II deficiency are rare. Relying mostly on case reports, the following agents should be avoided:
Valproic acid
General anesthesia
Ibuprofen
Diazepam in high doses
Source: GeneReviews — "Carnitine Palmitoyltransferase II Deficiency"
Promising results have been obtained with treatment of cardiomyopathy and rhabdomyolysis in long-chain fat oxidation disorders using anaplerotic odd-chain triglycerides . These results were confirmed in seven individuals with CPT II deficiency, who avoided rhabdomyolysis or hospitalization while on the triheptanoin (anaplerotic) diet. Affected individuals returned to normal physical activity including strenuous sports . Fibrates are a class of hypolipidemic drugs that increase high-density lipoprotein levels by mRNA upregulation of many lipid-metabolism genes through interaction with the steroid/thyroid transcription factor PPARa.
Source: GeneReviews — "Carnitine Palmitoyltransferase II Deficiency"
1 trial found
Annual or more frequent monitoring to regulate medication and diet is indicated.
Source: GeneReviews — "Carnitine Palmitoyltransferase II Deficiency"
Phenotype severity distribution: 3 very common features, 10 common features.
Estimated prevalence: 1-9 in 100,000 (Uncommon).
1 clinical trial registered. Interventions under study include other interventions. Research is primarily sponsored by academic and government institutions.
23 publications have been identified in PubMed for carnitine palmitoyltransferase II deficiency. Research spans Case Report / Case Series (48%), Review / Meta-Analysis (22%), and Basic Science / Preclinical (13%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 11 | 48% |
Research summaries | 5 | 22% |
Laboratory research | 3 | 13% |
Disease patterns and progression | 3 | 13% |
Testing and diagnosis research | 1 | 4% |
Shakerdi LA (2026). [PMID: 41827485](https://pubmed.ncbi.nlm.nih.gov/41827485/). *J Clin Med*. [Review / Meta-Analysis]
Politei J (2026). [PMID: 41220247](https://pubmed.ncbi.nlm.nih.gov/41220247/). *Lipids*. [Review / Meta-Analysis]
Sultan R (2026). [PMID: 41812502](https://pubmed.ncbi.nlm.nih.gov/41812502/). *Mol Genet Metab*. [Epidemiology / Natural History]
Tajima G (2026). [PMID: 42201228](https://pubmed.ncbi.nlm.nih.gov/42201228/). *Int J Neonatal Screen*. [Diagnostic / Biomarker]
Grünert SC (2026). [PMID: 41554131](https://pubmed.ncbi.nlm.nih.gov/41554131/). *J Inherit Metab Dis*. [Epidemiology / Natural History]
Ziagaki A (2026). [PMID: 41699218](https://pubmed.ncbi.nlm.nih.gov/41699218/). *MMW Fortschr Med*. [Review / Meta-Analysis]
Crisafulli O (2025). [PMID: 39653856](https://pubmed.ncbi.nlm.nih.gov/39653856/). *Eur J Appl Physiol*. [Case Report / Case Series]
Tan YY (2025). [PMID: 41341108](https://pubmed.ncbi.nlm.nih.gov/41341108/). *Front Pediatr*. [Case Report / Case Series]
Ozkan Kurtgoz P (2025). [PMID: 39670416](https://pubmed.ncbi.nlm.nih.gov/39670416/). *Hemodial Int*. [Case Report / Case Series]
Krug A (2025). [PMID: 40545541](https://pubmed.ncbi.nlm.nih.gov/40545541/). *J Med Case Rep*. [Case Report / Case Series]