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Any Alagille syndrome due to a variation in the JAG1 gene that affects many organ systems including the liver, heart, skeleton, eyes and kidneys.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Kidneys and urinary system | 7 | Renal hypoplasia, Multiple small medullary renal cysts, Renal artery stenosis |
Digestive system | 7 | Hepatocellular carcinoma, Exocrine pancreatic insufficiency, Cholestasis |
Brain and nerves | 6 | Stroke, Mild intellectual disability, Specific learning disability |
Heart and blood vessels | 3 | Stroke, Ventricular septal defect, Atrial septal defect |
Eyes | 3 | Strabismus, Cataract, Pigmentary retinopathy |
Muscles | 2 | Low muscle tone (hypotonia), Chorioretinal atrophy |
Lungs and breathing | 1 | Peripheral pulmonary artery stenosis |
Head and neck | 1 | Triangular face |
Growth and development | 1 | Failure to thrive |
Arms and legs | 1 | Short distal phalanx of finger |
Bones and joints | 1 | Butterfly vertebral arch |
Lab test results | 1 | Elevated circulating hepatic transaminase concentration |
Pregnancy and birth | 1 | Prolonged neonatal jaundice |
Hormones | 1 | Papillary thyroid carcinoma |
Alagille syndrome (ALGS) is a multisystem disorder with a wide spectrum of clinical variability ranging from life-threatening liver or cardiac disease to only subclinical manifestations (e.g., butterfly vertebrae, posterior embryotoxon, characteristic facial features) . Some individuals present with an isolated feature (e.g., cardiac disease, aneurysmal disease) . Clinical variability is seen even among individuals from the same family . To date, more than 700 individuals with ALGS have been found to have a pathogenic variant in JAG1 or NOTCH2 . lists the phenotypic features associated with this condition. Table 2. Alagille Syndrome: Frequency of Select Features
Feature | % of Persons w/Feature | Comment |
|---|---|---|
Hepatic abnormality | 95% | Bile duct paucity; conjugated hyperbilirubinemia; chronic cholestasis characterized by pruritus, xanthomas, fat-soluble vitamin deficiencies; end-stage liver disease |
Cardiac manifestations | 90%-97% | Most commonly including peripheral pulmonary stenosis tetralogy of Fallot |
Posterior embryotoxon | 78%-89% | — |
Vertebral anomalies | 33%-93% | — |
Characteristic facies | 20%-90% | — |
Renal manifestations | 39% | Renal malformations kidney disease |
Vascular | 15%-30% | Intracranial bleeds, systemic vascular anomalies, other, including moyamoya disease Onset. Individuals with ALGS who have severe liver or cardiac involvement are most often diagnosed in infancy. |
Source: GeneReviews — "Alagille Syndrome"
JAG1 encodes jagged canonical Notch ligand 1 (1,218 aa). Ligand for multiple Notch receptors and involved in the mediation of Notch signaling. May be involved in cell-fate decisions during hematopoiesis. Highest expression in Artery Tibial (202.9 TPM) and Artery Coronary (150.2 TPM).
Alagille syndrome due to a JAG1 point mutation is caused by mutations in the JAG1 gene on chromosome 20.
The JAG1 protein participates in JAG1 gene expression is inhibited by RUNX3, Expression of JAG1 during nephron development, and NOTCH1 t(7;9)(NOTCH1:M1580_K2555) does not bind JAG1 pathways.
JAG1 is classified as a druggable target (Druggable Genome and Growth Factor categories) with score 8.7.
No genotype-phenotype correlations for JAG1 or NOTCH2 have been identified.
Source: GeneReviews — "Alagille Syndrome"
ALGS associated with pathogenic variants in either of the known causative genes (JAG1 and NOTCH2) demonstrates highly variable expressivity with clinical features ranging from subclinical to severe. JAG1. To determine the range and frequency of clinical findings in individuals with a JAG1 pathogenic variant and, hence, the penetrance, studied 53 JAG1 variant-confirmed relatives of probands with ALGS. Their findings identified two such individuals with no features of ALGS – a 96% penetrance rate. NOTCH2. Penetrance appears complete in the individuals so far identified with NOTCH2 pathogenic variants .
Source: GeneReviews — "Alagille Syndrome"
Clinical diagnostic criteria for Alagille syndrome (ALGS) have been published .
ALGS should be suspected in individuals with any combination of the following histologic findings, major clinical features, and/or family history. The histologic finding of bile duct paucity (an increased portal tract-to-bile duct ratio) on liver biopsy. Although considered to be the most important and constant feature of ALGS, bile duct paucity is only identified in 65% of biopsies done in the first three months of life. In the newborn, a normal ratio of portal tracts to bile ducts, bile duct proliferation, or histology suggestive of neonatal hepatitis may be observed. Eventually, bile duct paucity is present in about 95% of individuals .
Source: GeneReviews — "Alagille Syndrome"
Bile duct paucity is not seen exclusively in Alagille syndrome (ALGS). Other causes of bile duct paucity include single-gene disorders , chromosome abnormalities (Down syndrome), infectious diseases (congenital cytomegalovirus, congenital rubella, congenital syphilis, hepatitis B), and immunologic disorders (graft-vs-host disease, chronic hepatic allograft rejection, primary sclerosing cholangitis). These can be distinguished from ALGS by history, by the presence of other findings, or by genetic testing. Intrahepatic cholestasis. Selected examples of inherited disorders associated with intrahepatic cholestasis are listed in . These conditions are largely confined to the liver, but some are associated with extrahepatic manifestations. Neonatal cholestasis.
Source: GeneReviews — "Alagille Syndrome"
Genetic testing for JAG1 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for Alagille syndrome due to a JAG1 point mutation has been reported in the published literature.
No approved treatments are currently available for Alagille syndrome due to a JAG1 point mutation. The disease remains an area of unmet medical need.
No clinical practice guidelines for Alagille syndrome (ALGS) have been published.
To establish the extent of disease and needs in an individual diagnosed with ALGS, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 5.
Alagille Syndrome: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| Eval by gastroenterologist to incl:
Total conjugated/direct bilirubin
Liver enzymes (incl GGT)
Clotting studies
| If determined necessary by gastroenterologist, additional studies incl:
Serum bile acids
Lipid panel
Fat-soluble vitamin levels
Hepatic ultrasound
Tc-99m DISIDA scintigraphy
Liver biopsy
| Complete cardiology eval | Incl echocardiogram
Eyes | Ophthalmologic eval | Look for anterior chamber anomalies.
| AP lateral chest radiographs to evaluate for presence of butterfly vertebrae |
| Evaluate w/renal function studies renal ultrasound |
| Measurement of growth parameters plotting on age-appropriate growth charts |
| Screening developmental eval | Perform more detailed eval if significant delays are identified.
| By genetics professionals1 | To inform affected persons their families re nature, MOI, implications of ALGS to facilitate medical personal decision making
Family support
Source: GeneReviews — "Alagille Syndrome"
Contact sports should be avoided by all individuals, especially those with chronic liver disease, splenomegaly, and vascular involvement. Individuals with liver disease should avoid alcohol consumption.
Source: GeneReviews — "Alagille Syndrome"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Alagille Syndrome"
View trials for Alagille syndrome due to a JAG1 point mutation
To date, surveillance guidelines for ALGS have not been published. In the absence of published guidelines, recommendations to monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations are based on the authors' personal experience managing individuals with this disorder . Table 7. Alagille Syndrome: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
Liver disease | Assess liver function | Per gastroenterologist/hepatologist |
Hepatocellular carcinoma | Serum alpha-fetoprotein ultrasound of liver | While no formal guidelines are available, one recent study has recommended screening every 6 mos at all ages.1 |
Growth/Nutrition | Monitor growth using standard growth charts. | At each visit Nutrition assessment |
Cardiac manifestations | Assess for signs/symptoms of vascular manifestations. | Per cardiologist; Note: At this time, the efficacy of presymptomatic screening for vascular anomalies in persons w/ALGS has not been formally evaluated. |
Vision deficits | Vision assessment | Per ophthalmologist |
Skeletal manifestations | Asses for recurrent fractures. | At each visit Renal disease |
Source: GeneReviews — "Alagille Syndrome"
Phenotype severity distribution: 16 always present features.
No clinical trials have been registered for Alagille syndrome due to a JAG1 point mutation.
106 publications have been identified in PubMed for Alagille syndrome due to a JAG1 point mutation. Research spans Review / Meta-Analysis (33%), Case Report / Case Series (25%), and Basic Science / Preclinical (11%).
Research Type | Count | % of Total |
|---|---|---|
Research summaries | 35 | 33% |
Patient case studies | 26 | 25% |
Laboratory research | 12 | 11% |
Disease patterns and progression | 12 | 11% |
Testing and diagnosis research | 7 | 7% |
New treatment approaches | 6 | 6% |
Other research | 4 | 4% |
Clinical study results | 4 | 4% |
Anbarasu K (2026). [PMID: 42150168](https://pubmed.ncbi.nlm.nih.gov/42150168/). *Expert Opin Ther Targets*. [Other]
Khan MA (2026). [PMID: 41847280](https://pubmed.ncbi.nlm.nih.gov/41847280/). *Neuroophthalmology*. [Case Report / Case Series]
Choi S (2026). [PMID: 41961327](https://pubmed.ncbi.nlm.nih.gov/41961327/). *Eur J Pediatr*. [Epidemiology / Natural History]
Sciveres M (2026). [PMID: 41718432](https://pubmed.ncbi.nlm.nih.gov/41718432/). *Pediatr Rep*. [Review / Meta-Analysis]
Grynblat J (2026). [PMID: 42114419](https://pubmed.ncbi.nlm.nih.gov/42114419/). *Respir Med Res*. [Epidemiology / Natural History]
Yodoshi T (2026). [PMID: 41640954](https://pubmed.ncbi.nlm.nih.gov/41640954/). *World J Hepatol*. [Other]
Xuan W (2026). [PMID: 41928326](https://pubmed.ncbi.nlm.nih.gov/41928326/). *J Med Case Rep*. [Review / Meta-Analysis]
Dahshan M (2026). [PMID: 42187864](https://pubmed.ncbi.nlm.nih.gov/42187864/). *Diseases*. [Review / Meta-Analysis]
Krishna M (2026). [PMID: 41645895](https://pubmed.ncbi.nlm.nih.gov/41645895/). *Liver Int*. [Review / Meta-Analysis]
Shi Q (2026). [PMID: 41878160](https://pubmed.ncbi.nlm.nih.gov/41878160/). *Front Cell Dev Biol*. [Review / Meta-Analysis]
Data assembled from 8 of 12 sources · Last updated Sep 20, 2026, 4:52 AM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Common questions about Alagille syndrome due to a JAG1 point mutation
AI-curated news mentioning Alagille syndrome due to a JAG1 point mutation
Updated Jul 8, 2026
A new treatment for children aged 2 or older with sickle cell disease has been approved by the U.S. Food & Drug Administration. In a press release on Wednesday, the FDA announced it had approved Casgevy, the first gene therapy for children with sickle cell disease. (NewsNation) — A new treatment for children aged 2 or older with sickle cell disease has been approved by the Food & Drug Administration (FDA). In a Wednesday news release, the FDA announced it had approved Casgevy, the first gene therapy for children with the disease. “Casgevy is a gene therapy consisting of the patient’s own (autologous) hematopoietic (blood) stem cells, administered as a one-time single dose for intravenous infusion,” the release noted. “Pediatric patients as young as 2 years of age can now access a critical additional treatment option to treat these debilitating, life-threatening diseases,” Karim Mikhail, the acting director of the Center for Biologics Evaluation and Research, wrote. “These disorders carry a heavy burden for children and their families, affecting growth, development, and long-term health in profound ways,” Megha Kaushal, acting deputy director of the Office of Therapeutic Products in CBER, said in the release.