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A genetic condition caused by pathogenic variants in the NOTCH2 gene upstream of those implicated with Hajdu-Cheney syndrome. The mechanism of pathogenicity for Alagille syndrome appears to be haploinsufficiency. Key features include bile duct paucity, cholestasis, congenital heart defects, butterfly vertebrae, posterior embryotoxon, and distinctive facial characteristics. Renal abnormalities may also be present.
Features include: Cholestasis, Long nose, Renal hypoplasia, and Reduced kidney function (renal insufficiency) and 14 more.
Organ System | Phenotype Count | Example Features |
|---|---|---|
Kidneys and urinary system | 6 | Renal hypoplasia, Reduced kidney function (renal insufficiency), Blood in the urine (hematuria) |
Digestive system | 2 | Cholestasis, Cholestatic liver disease |
Heart and blood vessels | 2 | Hypertension, Atrial septal defect |
Lungs and breathing | 1 | Peripheral pulmonary artery stenosis |
Head and neck | 1 | Triangular face |
Alagille syndrome (ALGS) is a multisystem disorder with a wide spectrum of clinical variability ranging from life-threatening liver or cardiac disease to only subclinical manifestations (e.g., butterfly vertebrae, posterior embryotoxon, characteristic facial features) . Some individuals present with an isolated feature (e.g., cardiac disease, aneurysmal disease) . Clinical variability is seen even among individuals from the same family . To date, more than 700 individuals with ALGS have been found to have a pathogenic variant in JAG1 or NOTCH2 . lists the phenotypic features associated with this condition. Table 2. Alagille Syndrome: Frequency of Select Features
Feature | % of Persons w/Feature | Comment |
|---|---|---|
Hepatic abnormality | 95% | Bile duct paucity; conjugated hyperbilirubinemia; chronic cholestasis characterized by pruritus, xanthomas, fat-soluble vitamin deficiencies; end-stage liver disease |
NOTCH2 encodes notch receptor 2 (2,471 aa). Functions as a receptor for membrane-bound ligands Jagged-1 (JAG1), Jagged-2 (JAG2) and Delta-1 (DLL1) to regulate cell-fate determination. Highest expression in Cells Cultured fibroblasts (76.5 TPM) and Artery Aorta (56.8 TPM).
Alagille syndrome due to a NOTCH2 point mutation is associated with mutations in the NOTCH2 gene on chromosome 1.
The NOTCH2 protein participates in FRINGE-modified NOTCH2 extracellular fragment (NECD2) and FRINGE-modified NOTCH2 Extracellular Fragment (NECD2) pathways.
NOTCH2 is classified as a druggable target (Cell Surface, Clinically Actionable, and Druggable Genome categories) with score 14.9.
No genotype-phenotype correlations for JAG1 or NOTCH2 have been identified.
Source: GeneReviews — "Alagille Syndrome"
ALGS associated with pathogenic variants in either of the known causative genes (JAG1 and NOTCH2) demonstrates highly variable expressivity with clinical features ranging from subclinical to severe. JAG1. To determine the range and frequency of clinical findings in individuals with a JAG1 pathogenic variant and, hence, the penetrance, studied 53 JAG1 variant-confirmed relatives of probands with ALGS. Their findings identified two such individuals with no features of ALGS – a 96% penetrance rate. NOTCH2. Penetrance appears complete in the individuals so far identified with NOTCH2 pathogenic variants .
Source: GeneReviews — "Alagille Syndrome"
Clinical diagnostic criteria for Alagille syndrome (ALGS) have been published .
ALGS should be suspected in individuals with any combination of the following histologic findings, major clinical features, and/or family history. The histologic finding of bile duct paucity (an increased portal tract-to-bile duct ratio) on liver biopsy. Although considered to be the most important and constant feature of ALGS, bile duct paucity is only identified in 65% of biopsies done in the first three months of life. In the newborn, a normal ratio of portal tracts to bile ducts, bile duct proliferation, or histology suggestive of neonatal hepatitis may be observed. Eventually, bile duct paucity is present in about 95% of individuals .
Source: GeneReviews — "Alagille Syndrome"
Bile duct paucity is not seen exclusively in Alagille syndrome (ALGS). Other causes of bile duct paucity include single-gene disorders , chromosome abnormalities (Down syndrome), infectious diseases (congenital cytomegalovirus, congenital rubella, congenital syphilis, hepatitis B), and immunologic disorders (graft-vs-host disease, chronic hepatic allograft rejection, primary sclerosing cholangitis). These can be distinguished from ALGS by history, by the presence of other findings, or by genetic testing. Intrahepatic cholestasis. Selected examples of inherited disorders associated with intrahepatic cholestasis are listed in . These conditions are largely confined to the liver, but some are associated with extrahepatic manifestations. Neonatal cholestasis.
Source: GeneReviews — "Alagille Syndrome"
Genetic testing for NOTCH2 is available. Testing is considered confirmatory for diagnosis.
Biomarker and diagnostic research for Alagille syndrome due to a NOTCH2 point mutation has been reported in the published literature.
No approved treatments are currently available for Alagille syndrome due to a NOTCH2 point mutation. The disease remains an area of unmet medical need.
No clinical practice guidelines for Alagille syndrome (ALGS) have been published.
To establish the extent of disease and needs in an individual diagnosed with ALGS, the evaluations summarized (if not performed as part of the evaluation that led to the diagnosis) are recommended.
Table 5.
Alagille Syndrome: Recommended Evaluations Following Initial Diagnosis
System/Concern | Evaluation | Comment
| Eval by gastroenterologist to incl:
Total conjugated/direct bilirubin
Liver enzymes (incl GGT)
Clotting studies
| If determined necessary by gastroenterologist, additional studies incl:
Serum bile acids
Lipid panel
Fat-soluble vitamin levels
Hepatic ultrasound
Tc-99m DISIDA scintigraphy
Liver biopsy
| Complete cardiology eval | Incl echocardiogram
Eyes | Ophthalmologic eval | Look for anterior chamber anomalies.
| AP lateral chest radiographs to evaluate for presence of butterfly vertebrae |
| Evaluate w/renal function studies renal ultrasound |
| Measurement of growth parameters plotting on age-appropriate growth charts |
| Screening developmental eval | Perform more detailed eval if significant delays are identified.
| By genetics professionals1 | To inform affected persons their families re nature, MOI, implications of ALGS to facilitate medical personal decision making
Family support
Source: GeneReviews — "Alagille Syndrome"
Contact sports should be avoided by all individuals, especially those with chronic liver disease, splenomegaly, and vascular involvement. Individuals with liver disease should avoid alcohol consumption.
Source: GeneReviews — "Alagille Syndrome"
Search ClinicalTrials.gov in the US and EU Clinical Trials Register in Europe for access to information on clinical studies for a wide range of diseases and conditions. Note: There may not be clinical trials for this disorder.
Source: GeneReviews — "Alagille Syndrome"
View trials for Alagille syndrome due to a NOTCH2 point mutation
To date, surveillance guidelines for ALGS have not been published. In the absence of published guidelines, recommendations to monitor existing manifestations, the individual's response to supportive care, and the emergence of new manifestations are based on the authors' personal experience managing individuals with this disorder . Table 7. Alagille Syndrome: Recommended Surveillance
System/Concern | Evaluation | Frequency |
|---|---|---|
Liver disease | Assess liver function | Per gastroenterologist/hepatologist |
Hepatocellular carcinoma | Serum alpha-fetoprotein ultrasound of liver | While no formal guidelines are available, one recent study has recommended screening every 6 mos at all ages.1 |
Growth/Nutrition | Monitor growth using standard growth charts. | At each visit Nutrition assessment |
Cardiac manifestations | Assess for signs/symptoms of vascular manifestations. | Per cardiologist; Note: At this time, the efficacy of presymptomatic screening for vascular anomalies in persons w/ALGS has not been formally evaluated. |
Vision deficits | Vision assessment | Per ophthalmologist |
Skeletal manifestations | Asses for recurrent fractures. | At each visit Renal disease |
Source: GeneReviews — "Alagille Syndrome"
No clinical trials have been registered for Alagille syndrome due to a NOTCH2 point mutation.
128 publications have been identified in PubMed for Alagille syndrome due to a NOTCH2 point mutation. Research spans Case Report / Case Series (29%), Basic Science / Preclinical (20%), and Review / Meta-Analysis (18%).
Research Type | Count | % of Total |
|---|---|---|
Patient case studies | 37 | 29% |
Laboratory research | 26 | 20% |
Research summaries | 23 | 18% |
Disease patterns and progression | 15 | 12% |
New treatment approaches | 12 | 9% |
Clinical study results | 8 | 6% |
Testing and diagnosis research | 6 | 5% |
Other research | 1 | 1% |
Yodoshi T (2026). [PMID: 41640954](https://pubmed.ncbi.nlm.nih.gov/41640954/). *World journal of hepatology*. [Diagnostic / Biomarker]
Unknown (2026). [PMID: 42118890](https://pubmed.ncbi.nlm.nih.gov/42118890/). *Unknown Journal*. [Review / Meta-Analysis]
Khan MA (2026). [PMID: 41847280](https://pubmed.ncbi.nlm.nih.gov/41847280/). *Neuro-ophthalmology (Aeolus Press)*. [Basic Science / Preclinical]
Thys L (2026). [PMID: 41138497](https://pubmed.ncbi.nlm.nih.gov/41138497/). *Pediatric neurology*. [Case Report / Case Series]
Buhl N (2026). [PMID: 41998240](https://pubmed.ncbi.nlm.nih.gov/41998240/). *Hum Genet*. [Diagnostic / Biomarker]
McCreary DJ (2026). [PMID: 42090075](https://pubmed.ncbi.nlm.nih.gov/42090075/). *J Ultrasound*. [Case Report / Case Series]
Xuan W (2026). [PMID: 41928326](https://pubmed.ncbi.nlm.nih.gov/41928326/). *J Med Case Rep*. [Case Report / Case Series]
Caenen-Braz C (2026). [PMID: 42099289](https://pubmed.ncbi.nlm.nih.gov/42099289/). *ACS Biomater Sci Eng*. [Basic Science / Preclinical]
Menguy L (2026). [PMID: 41061854](https://pubmed.ncbi.nlm.nih.gov/41061854/). *Kidney international*. [Gene Therapy / Novel Therapeutics]
Shi Q (2026). [PMID: 41878160](https://pubmed.ncbi.nlm.nih.gov/41878160/). *Front Cell Dev Biol*. [Review / Meta-Analysis]
Data assembled from 7 of 12 sources · Last updated Sep 20, 2026, 6:04 PM UTC
Online Mendelian Inheritance in Man
European rare disease database
Genetic and Rare Diseases Info Center
Cardiac manifestations
90%-97% |
Most commonly including peripheral pulmonary stenosis tetralogy of Fallot |
Posterior embryotoxon | 78%-89% | — |
Vertebral anomalies | 33%-93% | — |
Characteristic facies | 20%-90% | — |
Renal manifestations | 39% | Renal malformations kidney disease |
Vascular | 15%-30% | Intracranial bleeds, systemic vascular anomalies, other, including moyamoya disease Onset. Individuals with ALGS who have severe liver or cardiac involvement are most often diagnosed in infancy. |
Source: GeneReviews — "Alagille Syndrome"
AI-curated news mentioning Alagille syndrome due to a NOTCH2 point mutation
Updated Jul 21, 2026
FDA approved Casgevy CRISPR gene therapy for children as young as 2 with sickle cell disease on July 1, 2026. Here's what families need to know about this milestone. Approximately 5,500 additional American children are now eligible for this established one-time therapy, according to Vertex Pharmaceuticals, Casgevy's developer. Casgevy also covers transfusion-dependent beta-thalassemia in this new age indication. Sickle cell disease is a lifelong inherited blood disorder that warps red blood cells into stiff, crescent shapes that can block blood flow, starving organs and tissues of oxygen. The world's first CRISPR-based gene therapy has been approved for children as young as two years old, opening the possibility of a single, potentially curative treatment to thousands of American children with sickle cell disease before years of organ damage can narrow what medicine can do for them. Families with children aged 2 and older who have sickle cell disease should speak with their pediatric hematologist about whether Casgevy is appropriate to consider at this stage of their child's disease. Ask specifically which authorized treatment centers perform Casgevy in your region. Treatment is available only at specialized sites, and geographic access remains limited. Contact your child's insurance plan or Medicaid office to ask about coverage. Medicaid coverage for gene therapies varies by state, and some states have developed outcomes-based payment models for high-cost therapies. "With today's decision, pediatric patients as young as 2 years of age can now access a critical additional treatment option to treat these debilitating, life-threatening diseases," said Karim Mikhail, acting director of the Office of Therapeutic Products at the FDA's Center for Biologics Evaluation and Research, according to the FDA press announcement. Casgevy is a non-viral, ex vivo CRISPR/Cas9 gene-edited cell therapy.